replicates with haystack_bio

[mistrm82]

How does haystack_bio handle replicates? For example, if each celltype in the example had 3 replicates therefore 3 input BAMs can we still run this?

[rfarouni]

As of yet, it does not handle replicates. You would need to merge them. Of course you can also treat the 3 replicates as different cell types and merge the specific regions that are consistent across all three.